chr20:4680179:C>T Detail (hg19) (PRNP)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr20:4,680,179-4,680,179
hg38	chr20:4,699,533-4,699,533 View the variant detail on this assembly version.

HGVS

PRNP

Type	Transcript	Protein
RefSeq	NM_000311.3:c.313C>T	NP_000302.1:p.Pro105Ser
	NM_001080121.1:c.313C>T	NP_001073590.1:p.Pro105Ser
	NM_001080122.1:c.313C>T	NP_001073591.1:p.Pro105Ser
	NM_001080123.1:c.313C>T	NP_001073592.1:p.Pro105Ser
	NM_001271561.1:c.313C>T	NP_001258490.1:p.Pro105Ser
	NM_183079.2:c.313C>T	NP_898902.1:p.Pro105Ser
Ensemble	ENST00000379440.9:c.313C>T	ENST00000379440.9:p.Pro105Ser
	ENST00000424424.2:c.313C>T	ENST00000424424.2:p.Pro105Ser
	ENST00000430350.2:c.313C>T	ENST00000430350.2:p.Pro105Ser
	ENST00000457586.2:c.313C>T	ENST00000457586.2:p.Pro105Ser

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Uncertain significance
Review star
Show details

Links

PRNP

Type	Database	ID	Link
Gene	MIM	176640	OMIM
	HGNC	9449	HGNC
	Ensembl	ENSG00000171867	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2008-10-28	no assertion criteria provided	Gerstmann-Straussler-Scheinker syndrome	germline	Detail
Uncertain significance	2023-02-06	criteria provided, single submitter	not provided	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.600	Gerstmann-Straussler-Scheinker Disease	NA	CLINVAR		Detail
0.481	Prion Diseases	NA	CLINVAR		Detail
0.360	Spongiform encephalopathy with neuropsychiatric features	NA	CLINVAR		Detail
0.481	Prion Diseases	Atypical prion protein conformation in familial prion disease with PRNP P105T mu...	BeFree	20875062	Detail

Annotation

Annotations

Descrption	Source	Links
NM_000311.5(PRNP):c.313C>T (p.Pro105Ser) AND Gerstmann-Straussler-Scheinker syndrome	ClinVar	Detail
NM_000311.5(PRNP):c.313C>T (p.Pro105Ser) AND not provided	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
Atypical prion protein conformation in familial prion disease with PRNP P105T mutation.	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs74315414 dbSNP
Genome: hg19
Position: chr20:4,680,179-4,680,179
Variant Type: snv
Reference Allele: C
Alternative Allele: T

Genome browser